Conformations of Proteins in Equilibrium
نویسندگان
چکیده
منابع مشابه
Conformations of proteins in equilibrium.
We introduce a simple theoretical approach for an equilibrium study of proteins with known native-state structures. We test our approach with results on well-studied globular proteins, chymotrypsin inhibitor (2ci2), barnase, and the alpha spectrin SH3 domain, and present evidence for a hierarchical onset of order on lowering the temperature with significant organization at the local level even ...
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متن کاملConformations of amino acids in proteins.
The main-chain conformations of 237 384 amino acids in 1042 protein subunits from the PDB were analyzed with Ramachandran plots. The populated areas of the empirical Ramachandran plot differed markedly from the classical plot in all regions. All amino acids in alpha-helices are found within a very narrow range of phi, psi angles. As many as 40% of all amino acids are found in this most populate...
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Equilibrium transitions between side-chain conformations in leucine and isoleucine.
Despite recent improvements in computational methods for protein design, we still lack a quantitative, predictive understanding of the intrinsic probabilities for amino acids to adopt particular side-chain conformations. Surprisingly, this question has remained unsettled for many years, in part because of inconsistent results from different experimental approaches. To explicitly determine the r...
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ژورنال
عنوان ژورنال: Physical Review Letters
سال: 2001
ISSN: 0031-9007,1079-7114
DOI: 10.1103/physrevlett.87.088102